X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getcommandinfocommand.cpp;h=03c6b17a8a9be441c52070f2af24705eb8f3a168;hb=0cefb55a2616975bd4a144fc345693695ffc9bb6;hp=52559b3c064f6437affcbdc5dcd3d0b174089b42;hpb=220dc345e493cddc569521111ce32ac4d965ab7f;p=mothur.git diff --git a/getcommandinfocommand.cpp b/getcommandinfocommand.cpp index 52559b3..03c6b17 100644 --- a/getcommandinfocommand.cpp +++ b/getcommandinfocommand.cpp @@ -92,7 +92,7 @@ int GetCommandInfoCommand::execute(){ //loop through each command outputting info for (it = commands.begin(); it != commands.end(); it++) { - if (m->control_pressed) { m->mothurOut("[ERROR]: did not complete making the file."); m->mothurOutEndLine(); out.close(); remove((output+".temp").c_str()); } + if (m->control_pressed) { m->mothurOut("[ERROR]: did not complete making the file."); m->mothurOutEndLine(); out.close(); m->mothurRemove((output+".temp")); } Command* thisCommand = commandFactory->getCommand(it->first); @@ -121,6 +121,8 @@ int GetCommandInfoCommand::execute(){ } out << "citation=" << newCitationString << endl; + out << "description=" << thisCommand->getDescription() << endl; + //outputTypes - makes something like outputTypes=fasta-name-qfile map > thisOutputTypes = thisCommand->getOutputFiles(); map >::iterator itTypes; @@ -184,7 +186,7 @@ int GetCommandInfoCommand::execute(){ out2.close(); m->appendFiles(output+".temp", output); - remove((output+".temp").c_str()); + m->mothurRemove((output+".temp")); m->mothurOutEndLine(); m->mothurOut("Output File Names: "); m->mothurOutEndLine();