X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=genotypeizer;fp=genotypeizer;h=a4f2e4193079bb4a3ba40cea31a81c78899523db;hb=a000c62118b1e7e7f08957eb196651f8e5c08068;hp=00478d0ac4f140feebbddb93e578a755206ef6a1;hpb=35d3d7d8c8f715883a09c9d5fb0f0d6a19d002c5;p=bin.git

diff --git a/genotypeizer b/genotypeizer
index 00478d0..a4f2e41 100755
--- a/genotypeizer
+++ b/genotypeizer
@@ -209,7 +209,7 @@ else {
 
 @valid_snps{@{$options{snps}}} = (1) x $options{snps} if defined $options{snps} and @{$options{snps}};
 
-if ($options{output} eq 'pedmap') {
+if ($options{output_format} eq 'pedmap') {
     if (keys %valid_snps) {
 	%snps = map {($_,$snps{$_})} keys %valid_snps;
     }