X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=genotypeizer;fp=genotypeizer;h=8c441cd7e41217d647b08df6cb1748e66e026ef8;hb=da0108335ac5235eae48f67c823e6474043c34f4;hp=a4f2e4193079bb4a3ba40cea31a81c78899523db;hpb=a000c62118b1e7e7f08957eb196651f8e5c08068;p=bin.git

diff --git a/genotypeizer b/genotypeizer
index a4f2e41..8c441cd 100755
--- a/genotypeizer
+++ b/genotypeizer
@@ -223,7 +223,7 @@ if ($options{output_format} eq 'pedmap') {
 	    join("\t",
 		 @{$extra_info{$individual_id}}{qw(family_id individual_id),
 						    qw(paternal_id maternal_id sex phenotype)},
-		 keys %valid_snps ? @{$samples{$individual_id}}[@valid_snps{@snp_ordering}] : @{$samples{$individual_id}}
+		 keys %valid_snps ? @{$samples{$individual_id}}[map {($_*2,$_*2+1)} @valid_snps{@snp_ordering}] : @{$samples{$individual_id}}
 		)."\n";
     }
 }