X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=fullmatrix.cpp;h=8091554e946668fa47259f8157fb6bd489fb8b38;hb=1f78a8c454a636f19b4711bd52782ea1e3e81d3d;hp=43c6f2e30a6dc04458e5aab7c42a8ada3636dae5;hpb=8ab46c171b45ae3782d839539792d049017a361b;p=mothur.git

diff --git a/fullmatrix.cpp b/fullmatrix.cpp
index 43c6f2e..8091554 100644
--- a/fullmatrix.cpp
+++ b/fullmatrix.cpp
@@ -18,8 +18,9 @@ FullMatrix::FullMatrix(ifstream& filehandle) {
 		groupmap = globaldata->gGroupmap;
 		
 		string name, group;
-		filehandle >> numSeqs >> name;
 		
+		filehandle >> numSeqs >> name;
+	
 		//make the matrix filled with zeros
 		matrix.resize(numSeqs); 
 		for(int i = 0; i < numSeqs; i++) {
@@ -55,7 +56,7 @@ FullMatrix::FullMatrix(ifstream& filehandle) {
 				break;
 			}
 		}
-		
+	cout << "here" << endl;	
 		//read rest of matrix
 		if (square == true) {  readSquareMatrix(filehandle); }
 		else {  readLTMatrix(filehandle); }
@@ -73,7 +74,7 @@ FullMatrix::FullMatrix(ifstream& filehandle) {
 /**************************************************************************/
 int FullMatrix::readSquareMatrix(ifstream& filehandle) {
 	try {
-	
+	cout << "square" << endl;
 		Progress* reading;
 		reading = new Progress("Reading matrix:     ", numSeqs * numSeqs);
 		
@@ -116,6 +117,7 @@ int FullMatrix::readSquareMatrix(ifstream& filehandle) {
 /**************************************************************************/
 int FullMatrix::readLTMatrix(ifstream& filehandle) {
 	try {
+	cout << "lt" << endl;	
 		Progress* reading;
 		reading = new Progress("Reading matrix:     ", numSeqs * (numSeqs - 1) / 2);