X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=fullmatrix.cpp;fp=fullmatrix.cpp;h=6ea2318d740003f8cf46ec7e63815c175e1893ca;hb=28b6634fd8f44d28b957b9ace79703c0ac79741c;hp=64d7b6af2dbe39279164fbe299c86a617af278e7;hpb=3659285c05daa94306a7b61dd97ec945b23d472b;p=mothur.git

diff --git a/fullmatrix.cpp b/fullmatrix.cpp
index 64d7b6a..6ea2318 100644
--- a/fullmatrix.cpp
+++ b/fullmatrix.cpp
@@ -56,14 +56,9 @@ FullMatrix::FullMatrix(ifstream& filehandle) {
 		if (square == true) { readSquareMatrix(filehandle); }
 		else { readLTMatrix(filehandle); }
 		
-		
-		
-	printMatrix(cout);
 		//sort sequences so they are gathered in groups for processing
 		sortGroups(0, numSeqs-1);
-		cout << "after sort" << endl;
-	printMatrix(cout);
-		
+			
 	}
 	catch(exception& e) {
 		cout << "Standard Error: " << e.what() << " has occurred in the FullMatrix class Function FullMatrix. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
@@ -204,8 +199,6 @@ void FullMatrix::sortGroups(int low, int high){
 				
 				i++; 
 				j--;
-cout << "swapping rows " << i << " " << j << endl;
-printMatrix(cout); cout << endl;
 			}
 		} while(i <= j);