X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=formatphylip.cpp;fp=formatphylip.cpp;h=d7211cf8c0a2b1b0ef08c8696e348358404ae369;hb=f89b6501b7d80e705b6c50ff2c8bdd8bb5d2edf7;hp=4a7878a54a19fb6a63ad32c00d359c7b490e5216;hpb=6777912b79eb6d011163da47f3ada09d1a9293c1;p=mothur.git

diff --git a/formatphylip.cpp b/formatphylip.cpp
index 4a7878a..d7211cf 100644
--- a/formatphylip.cpp
+++ b/formatphylip.cpp
@@ -165,16 +165,16 @@ void FormatPhylipMatrix::read(NameAssignment* nameMap){
 				int index = nseqs;
 				map<int, float> rowMap;
 				map<int, float>::iterator itRow;
-
+				rowPos.resize(nseqs, -1);
                 
 				for(int i=0;i<nseqs;i++){
 					fileHandle >> name;                
-										
+									
 					list->set(i, name);
 					
 					for(int j=0;j<nseqs;j++){
 						fileHandle >> distance;
-						
+					
 						if (distance == -1) { distance = 1000000; }
 						
 						if((distance < cutoff) && (j != i)){
@@ -184,6 +184,8 @@ void FormatPhylipMatrix::read(NameAssignment* nameMap){
 						reading->update(index);
 					}
 					
+					gobble(fileHandle);
+			
 					//save position in file of each new row
 					rowPos[i] = out.tellp();