X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=formatmatrix.h;fp=formatmatrix.h;h=a02ef6cc27ac634eda25ec0c5b7cbc81b13c121a;hb=e1cf60b82a48d4d96e3a696a2d221c56cfb0b298;hp=0000000000000000000000000000000000000000;hpb=92f998cc7debc4bf3e8594848586b8153d96db16;p=mothur.git

diff --git a/formatmatrix.h b/formatmatrix.h
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+#ifndef FORMATMATRIX_H
+#define FORMATMATRIX_H
+
+/*
+ *  formatmatrix.h
+ *  Mothur
+ *
+ *  Created by westcott on 1/13/10.
+ *  Copyright 2010 Schloss Lab. All rights reserved.
+ *
+ */
+
+#include "mothur.h"
+#include "listvector.hpp"
+#include "nameassignment.hpp"
+
+
+//**********************************************************************************************************************
+
+class FormatMatrix {
+
+public:
+	FormatMatrix(){	}
+	virtual ~FormatMatrix() {}
+	
+	virtual void read(NameAssignment*){};
+	
+	void setCutoff(float c)			{	cutoff = c;			}
+	ListVector* getListVector()		{	return list;		}
+	string getFormattedFileName()	{	return distFile;	}
+	vector<int> getRowPositions()	{	return rowPos;		}
+	
+protected:
+	ListVector* list;
+	float cutoff;
+	string distFile;
+	vector<int> rowPos;
+};
+
+//**********************************************************************************************************************
+
+#endif
+