X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=flowdata.h;h=100765370ca5429e75b8688a6abc51d79f17edc5;hb=6ede3bf5c0a9eedb23f24577a97da81ab3e1f7df;hp=dafeab3e034b419ba7d4efcc998095cd984e014a;hpb=d635b39347cd81943ea50de7b813a0a5d743b0c0;p=mothur.git

diff --git a/flowdata.h b/flowdata.h
index dafeab3..1007653 100644
--- a/flowdata.h
+++ b/flowdata.h
@@ -18,24 +18,25 @@ class FlowData {
 
 public:
 	FlowData();
-	FlowData(ifstream&, float, float, int);
-	~FlowData(){};
+	FlowData(int, float, float, int, string);
+	~FlowData();
+	bool getNext(ifstream&);
+	string getName();
 	void capFlows(int);
 	bool hasMinFlows(int);
 	Sequence getSequence();
-	
-	int getSeqLength();
+
 	void printFlows(ofstream&);
 	void printFlows(ofstream&, string);
-	void printFASTA(ofstream&);
 private:
 	MothurOut* m;
-
-	void findDeadSpot(float, float, int);
-	void translateFlow();
 	
+	void updateEndFlow();
+	void translateFlow();
+	float signalIntensity, noiseIntensity;
+	int maxHomoP;
 	string seqName, locationString, sequence, baseFlow;
-	int numFlows, seqLength, deadSpot;
+	int numFlows, maxFlows, endFlow;
 	vector<float> flowData;
 };