X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=flowdata.h;fp=flowdata.h;h=dafeab3e034b419ba7d4efcc998095cd984e014a;hb=d635b39347cd81943ea50de7b813a0a5d743b0c0;hp=0000000000000000000000000000000000000000;hpb=f1e2f581f91d88e9d6c7a69e495b36031b29e4ab;p=mothur.git

diff --git a/flowdata.h b/flowdata.h
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+#ifndef FLOWDATA_H
+#define FLOWDATA_H
+
+/*
+ *  flowdata.h
+ *  Mothur
+ *
+ *  Created by Pat Schloss on 12/22/10.
+ *  Copyright 2010 Schloss Lab. All rights reserved.
+ *
+ */
+
+#include "mothur.h"
+#include "mothurout.h"
+#include "sequence.hpp"
+
+class FlowData {
+
+public:
+	FlowData();
+	FlowData(ifstream&, float, float, int);
+	~FlowData(){};
+	void capFlows(int);
+	bool hasMinFlows(int);
+	Sequence getSequence();
+	
+	int getSeqLength();
+	void printFlows(ofstream&);
+	void printFlows(ofstream&, string);
+	void printFASTA(ofstream&);
+private:
+	MothurOut* m;
+
+	void findDeadSpot(float, float, int);
+	void translateFlow();
+	
+	string seqName, locationString, sequence, baseFlow;
+	int numFlows, seqLength, deadSpot;
+	vector<float> flowData;
+};
+
+#endif