X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=flowdata.cpp;h=2891281c9de412a27b2d27229683c8d3bb7cf41b;hb=250e3b11b1c9c1e1ad458ab6c7e71ac2e67e11d9;hp=7d61f8c265e060f2dc0002c94f69edfd054f89ae;hpb=cd1a91833339b19a107ce769ee67b5fc74c93ce4;p=mothur.git

diff --git a/flowdata.cpp b/flowdata.cpp
index 7d61f8c..2891281 100644
--- a/flowdata.cpp
+++ b/flowdata.cpp
@@ -40,12 +40,19 @@ FlowData::FlowData(int numFlows, float signal, float noise, int maxHomoP, string
 //**********************************************************************************************************************
 
 bool FlowData::getNext(ifstream& flowFile){
-	
 	try {
+        
         seqName = getSequenceName(flowFile);
-		flowFile >> endFlow;	
+        if (m->debug) {  m->mothurOut("[DEBUG]: flow = " + seqName + " "); }
+		flowFile >> endFlow;
+        if (m->debug) {  m->mothurOut(toString(endFlow) + " "); }
         if (!m->control_pressed) {
-            for(int i=0;i<numFlows;i++)	{	flowFile >> flowData[i]; 	}
+            if (m->debug) {  m->mothurOut(" "); }
+            for(int i=0;i<numFlows;i++)	{
+                flowFile >> flowData[i];
+                if (m->debug) {  m->mothurOut(toString(flowData[i]) + " "); }
+            }
+            if (m->debug) {  m->mothurOut("\n"); }
             updateEndFlow(); 
             translateFlow();
             m->gobble(flowFile);