X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=filterseqscommand.h;h=c670f37919e7da8ce3e3f3ee5d294cd4d23acd94;hb=45b880733289694b2a23c9dc8a774aa626458f81;hp=cb02732d1ede7c7a70ec5a518426bca18a0019bf;hpb=284fd95c611ccc3b1a7875c4dacfca06d1f50ed6;p=mothur.git

diff --git a/filterseqscommand.h b/filterseqscommand.h
index cb02732..c670f37 100644
--- a/filterseqscommand.h
+++ b/filterseqscommand.h
@@ -18,7 +18,12 @@ class FilterSeqsCommand : public Command {
 
 public:
 	FilterSeqsCommand(string);
+	FilterSeqsCommand();
 	~FilterSeqsCommand() {};
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();	
 	void help();
 	
@@ -37,6 +42,7 @@ private:
 	int alignmentLength, processors;
 	vector<int> bufferSizes;
 	vector<string> outputNames;
+	map<string, vector<string> > outputTypes;
 
 	char trump;
 	bool abort;