X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=filterseqscommand.h;h=3bf36c040231c5f801281f9d553c60bed01101c8;hb=8dd3c225255d7084e3aff8740aa4f1f1cabb367a;hp=809c6eb69b427f8466cb97d60322e7a27b6d53ed;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git

diff --git a/filterseqscommand.h b/filterseqscommand.h
index 809c6eb..3bf36c0 100644
--- a/filterseqscommand.h
+++ b/filterseqscommand.h
@@ -26,15 +26,16 @@ public:
 	string getCommandCategory()		{ return "Sequence Processing";	}
 	string getHelpString();	
 	string getCitation() { return "http://www.mothur.org/wiki/Filter.seqs"; }
+	string getDescription()		{ return "removes columns from alignments based on a criteria defined by the user"; }
 	
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }	
 	
 private:
 	struct linePair {
-		unsigned long int start;
-		unsigned long int end;
-		linePair(unsigned long int i, unsigned long int j) : start(i), end(j) {}
+		unsigned long long start;
+		unsigned long long end;
+		linePair(unsigned long long i, unsigned long long j) : start(i), end(j) {}
 	};
 
 	vector<linePair*> lines;
@@ -58,8 +59,8 @@ private:
 	int driverRunFilter(string, string, string, linePair*);
 	int driverCreateFilter(Filters& F, string filename, linePair* line);
 	#ifdef USE_MPI
-	int driverMPIRun(int, int, MPI_File&, MPI_File&, vector<unsigned long int>&);
-	int MPICreateFilter(int, int, Filters&, MPI_File&, vector<unsigned long int>&);	
+	int driverMPIRun(int, int, MPI_File&, MPI_File&, vector<unsigned long long>&);
+	int MPICreateFilter(int, int, Filters&, MPI_File&, vector<unsigned long long>&);	
 	#endif
 	
 };