X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=filterseqscommand.cpp;h=a7d42b331bc3044de372c030175da4663f9e3a9c;hb=36a6b02cf7f09d2bc34376b588944a9ca73429c5;hp=93e18e82f374c9fa5bad6a90f6fc2ff56e20246a;hpb=43ed0accfbc2852849e104ff7eccdd2c42acd4ec;p=mothur.git

diff --git a/filterseqscommand.cpp b/filterseqscommand.cpp
index 93e18e8..a7d42b3 100644
--- a/filterseqscommand.cpp
+++ b/filterseqscommand.cpp
@@ -125,7 +125,12 @@ FilterSeqsCommand::FilterSeqsCommand(string option)  {
 			fasta = validParameter.validFile(parameters, "fasta", false);
 			if (fasta == "not found") { 				
 				fasta = m->getFastaFile(); 
-				if (fasta != "") { fastafileNames.push_back(fasta);  m->mothurOut("Using " + fasta + " as input file for the fasta parameter."); m->mothurOutEndLine(); }
+				if (fasta != "") { 
+                    fastafileNames.push_back(fasta);  
+                    m->mothurOut("Using " + fasta + " as input file for the fasta parameter."); m->mothurOutEndLine();
+                    string simpleName = m->getSimpleName(fasta);
+                    filterFileName += simpleName.substr(0, simpleName.find_first_of('.'));
+                }
 				else { 	m->mothurOut("You have no current fastafile and the fasta parameter is required."); m->mothurOutEndLine(); abort = true; }
 			}
 			else {