X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=filterseqscommand.cpp;h=9096bb671c830a7f5b0b3638ef0ef0a1d0a5f65d;hb=fc3b1fc4fc1c4e38fde6b0c0ee7896b5fe0b9d57;hp=806ca0d69cabd6056de8ce1870c628e40916e080;hpb=a626c629e4d4840cd2ce04d98055dcfef1f8593a;p=mothur.git

diff --git a/filterseqscommand.cpp b/filterseqscommand.cpp
index 806ca0d..9096bb6 100644
--- a/filterseqscommand.cpp
+++ b/filterseqscommand.cpp
@@ -420,7 +420,19 @@ int FilterSeqsCommand::filterSequences() {
 				MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case
 				
 #else
-			vector<unsigned long long> positions = savedPositions[s];
+            
+            vector<unsigned long long> positions;
+            if (savedPositions.size() != 0) { positions = savedPositions[s]; }
+            else {
+#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
+				positions = m->divideFile(fastafileNames[s], processors);
+#else
+                if(processors != 1){
+                    int numFastaSeqs = 0;
+                    positions = m->setFilePosFasta(fastafileNames[s], numFastaSeqs); 
+                }
+#endif
+            }
 		#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
 			//vector<unsigned long long> positions = m->divideFile(fastafileNames[s], processors);