X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=filterseqscommand.cpp;h=41c321933754ebb0a86dc279985a31711b31f629;hb=5c80ce8b80938d41cf6c64a017fa6fd50d45de5b;hp=28e137376c51261498a4d616ae929ba33b1ff3be;hpb=62cdb3eb996664abdb8fee21bf4a329cd0694867;p=mothur.git

diff --git a/filterseqscommand.cpp b/filterseqscommand.cpp
index 28e1373..41c3219 100644
--- a/filterseqscommand.cpp
+++ b/filterseqscommand.cpp
@@ -339,6 +339,8 @@ int FilterSeqsCommand::filterSequences() {
 					
 					lines.push_back(new linePair(0, numFastaSeqs));
 					
+					numSeqs += numFastaSeqs;
+					
 					driverRunFilter(filter, filteredFasta, fastafileNames[s], lines[0]);
 				}else{
 					setLines(fastafileNames[s]);
@@ -362,6 +364,8 @@ int FilterSeqsCommand::filterSequences() {
 					
 				lines.push_back(new linePair(0, numFastaSeqs));
 				
+				numSeqs += numFastaSeqs;
+				
 				driverRunFilter(filter, filteredFasta, fastafileNames[s], lines[0]);
 
 				if (m->control_pressed) {  return 1; }