X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=filterseqscommand.cpp;h=33790fe97632525cbb6c155ab953da531f770078;hb=2bb20fb79f19b8bda48492d89f8e8b7389431413;hp=2bf0fa344eaeb924525bd6f906d664c8874f3d61;hpb=af2ce19e213e5191f8c9fac4061e43f6e31a7fbf;p=mothur.git

diff --git a/filterseqscommand.cpp b/filterseqscommand.cpp
index 2bf0fa3..33790fe 100644
--- a/filterseqscommand.cpp
+++ b/filterseqscommand.cpp
@@ -116,7 +116,7 @@ FilterSeqsCommand::FilterSeqsCommand(string option)  {
 			
 			vertical = validParameter.validFile(parameters, "vertical", false);		
 			if (vertical == "not found") { 
-				if ((hard == "") && (trump == '*')) { vertical = "T"; } //you have not given a hard file or set the trump char.
+				if ((hard == "") && (trump == '*') && (soft == 0)) { vertical = "T"; } //you have not given a hard file or set the trump char.
 				else { vertical = "F";  }
 			}