X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=extractRef.cpp;h=3173d6517c1fccd6edcf03fa15502b64faadb28d;hb=fc69cf6af24c0550e55447fc82f01cb6f90c1c42;hp=693af6635ae9df85006dcc7b991ee5d2e497bed8;hpb=37513308b7557ae65899e59df8e43b5dec90da5c;p=rsem.git

diff --git a/extractRef.cpp b/extractRef.cpp
index 693af66..3173d65 100644
--- a/extractRef.cpp
+++ b/extractRef.cpp
@@ -303,7 +303,10 @@ int main(int argc, char* argv[]) {
 
 	for (int i = 1; i <= M; i++) {
 		if (seqs[i] == "") {
-			fprintf(stderr, "%s's sequence is empty! You must provide all chromosome files of transcripts which are presented in the .gtf file!\n", transcripts.getTranscriptAt(i).getTranscriptID().c_str());
+			const Transcript& transcript = transcripts.getTranscriptAt(i);
+			fprintf(stderr, "Cannot extract transcript %s's sequence from chromosome %s, whose information might not be provided! \"
+					"Please check if the chromosome directory is set correctly or the list of chromosome files is complete.\n", \
+					transcript.getTranscriptID().c_str(), transcript.getGeneID().c_str());
 			exit(-1);
 		}
 	}