X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=examples%2Ftoy.sam;h=33449b176bc030a032c261c5280a907cebd8e58a;hb=3a1bd4d97b4d58148b5a7fd845a3b6a023eecbed;hp=eae1e2d93d113d9b19b17236fb5386161e373fcd;hpb=33e43317b36c5ac90e6151f1f80b0d3694d66d4f;p=samtools.git

diff --git a/examples/toy.sam b/examples/toy.sam
index eae1e2d..33449b1 100644
--- a/examples/toy.sam
+++ b/examples/toy.sam
@@ -1,14 +1,14 @@
 @SQ	SN:ref	LN:45
 @SQ	SN:ref2	LN:40
-r001	163	ref	7	30	8M2I4M1D3M	=	37	39	TTAGATAAAGGATACTG	*
-r002	0	ref	9	30	1S2I6M1P1I4M2I	*	0	0	AAAAGATAAGGATAAA	*
+r001	163	ref	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112
+r002	0	ref	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*
 r003	0	ref	9	30	5H6M	*	0	0	AGCTAA	*
 r004	0	ref	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*
 r003	16	ref	29	30	6H5M	*	0	0	TAGGC	*
 r001	83	ref	37	30	9M	=	7	-39	CAGCGCCAT	*
-x1	0	ref2	1	30	20M	*	0	0	aggttttataaaacaaataa	::::::::::::::::::::
-x2	0	ref2	2	30	21M	*	0	0	ggttttataaaacaaataatt	:::::::::::::::::::::
-x3	0	ref2	6	30	9M4I13M	*	0	0	ttataaaacAAATaattaagtctaca	::::::::::::::::::::::::::
-x4	0	ref2	10	30	25M	*	0	0	CaaaTaattaagtctacagagcaac	:::::::::::::::::::::::::
-x5	0	ref2	12	30	24M	*	0	0	aaTaattaagtctacagagcaact	::::::::::::::::::::::::
-x6	0	ref2	14	30	23M	*	0	0	Taattaagtctacagagcaacta	:::::::::::::::::::::::
+x1	0	ref2	1	30	20M	*	0	0	aggttttataaaacaaataa	????????????????????
+x2	0	ref2	2	30	21M	*	0	0	ggttttataaaacaaataatt	?????????????????????
+x3	0	ref2	6	30	9M4I13M	*	0	0	ttataaaacAAATaattaagtctaca	??????????????????????????
+x4	0	ref2	10	30	25M	*	0	0	CaaaTaattaagtctacagagcaac	?????????????????????????
+x5	0	ref2	12	30	24M	*	0	0	aaTaattaagtctacagagcaact	????????????????????????
+x6	0	ref2	14	30	23M	*	0	0	Taattaagtctacagagcaacta	???????????????????????