X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=errorchecking.h;h=bbc3050f020c8ae10699bb050acca467363b2acf;hb=c196b6b4768ccb84955d773ff0f22e4994d1ba7b;hp=05ce5cf12a071c2e50409dd29c648447465f5bfe;hpb=51cf89e90eef8b300c2786eb1560dd89e6e83445;p=mothur.git

diff --git a/errorchecking.h b/errorchecking.h
index 05ce5cf..bbc3050 100644
--- a/errorchecking.h
+++ b/errorchecking.h
@@ -33,8 +33,9 @@ class ErrorCheck {
 		void validateBinFiles();
 		void clear();
 		void refresh();
-		string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, fastafile, treefile, sharedfile, cutoff, format; 
-		string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree, abund, sorted, scale;
+		string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, fastafile, nexusfile, clustalfile, treefile, sharedfile, cutoff, format; 
+		string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree, abund, sorted, trump, soft, filter, scale;
+
 		string commandName, optionText;
 		bool errorFree;