X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=errorchecking.cpp;h=430729d026ec5082416d2cdc118413dee290e48d;hb=39ef0543b73cb12dfc64529522b66ad3df7527d0;hp=d827929fd94290dbfb302d0fe36e76f4982874a0;hpb=7e0cf6431e287072c40b2c10c9e08199fce29ef4;p=mothur.git

diff --git a/errorchecking.cpp b/errorchecking.cpp
index d827929..430729d 100644
--- a/errorchecking.cpp
+++ b/errorchecking.cpp
@@ -352,13 +352,12 @@ bool ErrorCheck::checkInput(string input) {
 			//you want to do shared commands
 			if ((listfile != "") && (groupfile != ""))	{
 				validateParseFiles(); //checks the listfile and groupfile parameters
-			}else { //you want to do single commands
+			}else if (listfile != "") { //you want to do single commands
 				validateReadFiles();
 				validateReadPhil();
+			}else {//you are reading a shared file
+				validateReadFiles();
 			}
-		}else if (commandName == "read.shared") { 
-			//you want to do shared commands with just the shared file
-			validateReadFiles();
 		}else if (commandName == "read.tree") { 
 			validateTreeFiles(); //checks the treefile and groupfile parameters
 		}else if (commandName == "deconvolute") {