X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=engine.hpp;h=603ff0a1c65fa528439b7a8f456991ae600c26ef;hb=c53c53b0280452e1c3a087fbf807b2e508cd66c4;hp=7990d1790586b5980fb31ada11f85b540572858f;hpb=20a2d0350a737a434c89f303662d64a8eeea7b05;p=mothur.git

diff --git a/engine.hpp b/engine.hpp
index 7990d17..603ff0a 100644
--- a/engine.hpp
+++ b/engine.hpp
@@ -12,11 +12,11 @@
  
 
 
-#include <vector>
-#include <set>
-#include <string>
-
-using namespace std;
+#include "mothur.h"
+#include "globaldata.hpp"
+#include "commandoptionparser.hpp"
+#include "command.hpp"
+#include "commandfactory.hpp"
 
 class GlobalData;
 
@@ -35,7 +35,7 @@ protected:
 
 class BatchEngine : public Engine {
 public:
-	BatchEngine(string);
+	BatchEngine(string, string);
 	~BatchEngine();
 	virtual bool getInput();
 	int openedBatch;
@@ -49,7 +49,7 @@ private:
 
 class InteractEngine : public Engine {
 public:
-	InteractEngine();
+	InteractEngine(string);
 	~InteractEngine();
 	virtual bool getInput();
 private:
@@ -57,4 +57,18 @@ private:
 };
 
 
+class ScriptEngine : public Engine {
+public:
+	ScriptEngine(string, string);
+	~ScriptEngine();
+	virtual bool getInput();
+	int openedBatch;
+private:
+	GlobalData* globaldata;
+	string listOfCommands;
+	string getNextCommand(string&);
+
+};
+
+
 #endif