X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=engine.hpp;h=5311da9e1e3aafb3c447b2e51ec411cb29c79d14;hb=b1d143351bcd1b3b4a06ec525c386f161579ee32;hp=0e7721a1ba1a51566eaab52b909604a50d5a70eb;hpb=7837a9bfdfccdc26360987a44c389832fdb82651;p=mothur.git diff --git a/engine.hpp b/engine.hpp index 0e7721a..5311da9 100644 --- a/engine.hpp +++ b/engine.hpp @@ -13,14 +13,11 @@ #include "mothur.h" -#include "globaldata.hpp" #include "commandoptionparser.hpp" #include "command.hpp" #include "commandfactory.hpp" #include "mothurout.h" -class GlobalData; - class Engine { public: Engine(); @@ -36,6 +33,7 @@ protected: vector options; CommandFactory* cFactory; MothurOut* mout; + string findMothursPath(); }; @@ -47,7 +45,6 @@ public: virtual bool getInput(); int openedBatch; private: - GlobalData* globaldata; ifstream inputBatchFile; string getNextCommand(ifstream&); @@ -61,7 +58,7 @@ public: ~InteractEngine(); virtual bool getInput(); private: - GlobalData* globaldata; + }; @@ -72,7 +69,6 @@ public: virtual bool getInput(); int openedBatch; private: - GlobalData* globaldata; string listOfCommands; string getNextCommand(string&);