X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=engine.hpp;h=5311da9e1e3aafb3c447b2e51ec411cb29c79d14;hb=72e0be6b9c80009d4dbee24e8d690ad9514dc6fb;hp=0020a7f8d9d83a24b5b24c60fb0f86263edd5e44;hpb=84f93a9e670eb7f7e69e0468b9be4c53890c07f2;p=mothur.git

diff --git a/engine.hpp b/engine.hpp
index 0020a7f..5311da9 100644
--- a/engine.hpp
+++ b/engine.hpp
@@ -13,14 +13,11 @@
 
 
 #include "mothur.h"
-#include "globaldata.hpp"
 #include "commandoptionparser.hpp"
 #include "command.hpp"
 #include "commandfactory.hpp"
 #include "mothurout.h"
 
-class GlobalData;
-
 class Engine {
 public:
 	Engine(); 
@@ -36,6 +33,7 @@ protected:
 	vector<string> options;
 	CommandFactory* cFactory;
 	MothurOut* mout;
+	string findMothursPath();
 };
 
 
@@ -47,8 +45,8 @@ public:
 	virtual bool getInput();
 	int openedBatch;
 private:
-	GlobalData* globaldata;
 	ifstream inputBatchFile;
+	string getNextCommand(ifstream&);
 
 };
 
@@ -60,7 +58,7 @@ public:
 	~InteractEngine();
 	virtual bool getInput();
 private:
-	GlobalData* globaldata;
+	
 };
 
 
@@ -71,7 +69,6 @@ public:
 	virtual bool getInput();
 	int openedBatch;
 private:
-	GlobalData* globaldata;
 	string listOfCommands;
 	string getNextCommand(string&);