X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=engine.hpp;h=0e7721a1ba1a51566eaab52b909604a50d5a70eb;hb=7837a9bfdfccdc26360987a44c389832fdb82651;hp=cbcc99aaf2cd8ebc48f6512eb9e88967df8e94b3;hpb=315e38cf393c82be238da5b32574f225a020d25c;p=mothur.git

diff --git a/engine.hpp b/engine.hpp
index cbcc99a..0e7721a 100644
--- a/engine.hpp
+++ b/engine.hpp
@@ -17,6 +17,7 @@
 #include "commandoptionparser.hpp"
 #include "command.hpp"
 #include "commandfactory.hpp"
+#include "mothurout.h"
 
 class GlobalData;
 
@@ -26,11 +27,15 @@ public:
 	virtual ~Engine(){}
 	virtual bool getInput() = 0;
 	virtual string getCommand();
-	virtual string getOutputDir()	{	return cFactory->getOutputDir();  }
+	virtual string getOutputDir()			{	return cFactory->getOutputDir();	}
+	virtual string getLogFileName()			{	return cFactory->getLogfileName(); 	}
+	virtual bool getAppend()				{	return cFactory->getAppend();		}
+
 	vector<string> getOptions()		{	return options;		}
 protected:
 	vector<string> options;
 	CommandFactory* cFactory;
+	MothurOut* mout;
 };
 
 
@@ -44,6 +49,7 @@ public:
 private:
 	GlobalData* globaldata;
 	ifstream inputBatchFile;
+	string getNextCommand(ifstream&);
 
 };