X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=engine.cpp;h=e251f0031d5ffa2bc9685702ef76ae0489af8449;hb=16bea3130e36addc54e2116dfbcd02d706ebee45;hp=1ca98b021214e624215ec897a549e0f14ed47ca3;hpb=1b2517db06f3c6cd5f5c67198261361ce8dad611;p=mothur.git

diff --git a/engine.cpp b/engine.cpp
index 1ca98b0..e251f00 100644
--- a/engine.cpp
+++ b/engine.cpp
@@ -75,6 +75,8 @@ bool InteractEngine::getInput(){
 
 			cout << endl << "mothur > ";
 			getline(cin, input);
+			if (cin.eof()) { input = "quit()"; }
+			
 			errorFree = errorCheckor->checkInput(input);
 			if (errorFree == true) {
 				CommandOptionParser parser(input);
@@ -148,7 +150,9 @@ bool BatchEngine::getInput(){
 		while(quitCommandCalled == 0){
 		
 			getline(inputBatchFile, input);
-			cout << endl << "dotur > " << input << endl;
+			if (inputBatchFile.eof()) { input = "quit()"; }
+			
+			cout << endl << "mothur > " << input << endl;
 			errorFree = errorCheckor->checkInput(input);
 			if (errorFree == true) {
 				CommandOptionParser parser(input);