X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=eachgapdist.h;h=9034dbebbeb8ddb49fbf256663987b7f5a60df8c;hb=c5f38b0c83719306fd2e5a7a83e04988b1853f62;hp=d21e55ca1acb4e950b1126ade38a3237a7684ad9;hpb=cdcf99b7760701e6869ca8e4e6e91c8e8c4ae186;p=mothur.git diff --git a/eachgapdist.h b/eachgapdist.h index d21e55c..9034dbe 100644 --- a/eachgapdist.h +++ b/eachgapdist.h @@ -9,6 +9,7 @@ * */ + #include "dist.h" /**************************************************************************************************/ @@ -23,6 +24,7 @@ public: string seqA = A.getAligned(); string seqB = B.getAligned(); + int alignLength = seqA.length(); for(int i=0; i