X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=dlibshuff.h;fp=dlibshuff.h;h=402f4f338a7d152f03450e3ccfd6cafbada8dc4d;hb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;hp=0000000000000000000000000000000000000000;hpb=1b73ff67c83892a025e597dabd9df6fe7b58206a;p=mothur.git

diff --git a/dlibshuff.h b/dlibshuff.h
new file mode 100644
index 0000000..402f4f3
--- /dev/null
+++ b/dlibshuff.h
@@ -0,0 +1,29 @@
+#ifndef DLIBSHUFF
+#define DLIBSHUFF
+
+/*
+ *  dlibshuff.h
+ *  Mothur
+ *
+ *  Created by Pat Schloss on 4/8/09.
+ *  Copyright 2009 Patrick D. Schloss. All rights reserved.
+ *
+ */
+
+#include "fullmatrix.h"
+#include "libshuff.h"
+
+class DLibshuff : public Libshuff {
+
+public:
+	DLibshuff(FullMatrix*, int, float, float);
+	vector<vector<double> > evaluateAll();
+	float evaluatePair(int, int);
+
+private:
+	int numDXs;
+	double dCalculate(int, int);
+	vector<int> calcN(vector<double>);
+};
+
+#endif