X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=dla-resume.org;h=9604e257ca88b4a8603a7ad2c370e0c49e0ad877;hb=ce83b2150998c0083af725daccb4b281484ad9ba;hp=3c57f18f64adefdeb2cfe353f0a965fa55969170;hpb=9c1633036447d4c3a13b0affc813c2364c0730e2;p=resume.git

diff --git a/dla-resume.org b/dla-resume.org
index 3c57f18..9604e25 100644
--- a/dla-resume.org
+++ b/dla-resume.org
@@ -1,42 +1,33 @@
 #+OPTIONS: ^:nil
 #+OPTIONS: toc:nil
 #+TITLE: Resume
-#+AUTHOR: Don Armstrong
+#+AUTHOR: Don L. Armstrong
 #+LATEX_CMD: xelatex
 #+LATEX_CLASS: dlaresume
-#+LATEX_CLASS_OPTIONS: [10pt,breaklinks]
-
-#+BEGIN_EXPORT latex
-\begin{minipage}[t]{0.4\textwidth}
-  \begin{minipage}[c][0.6in]{2.3in}
-  {\color{headings}\fontsize{24pt}{24pt}\selectfont {\textsc{\textbf{\myauthor}}}}
-  {\footnotesize
-  \href{mailto:\myemail}{\myemail} \hfill
-  +1~714-813-8531 \\
-  {\centering  \href{\myweb}{\myweb} 
-  \href{https://github.com/dondelelcaro}{https://github.com/dondelelcaro}
-  }
-  }
-  \vfill
-  \end{minipage}
-  \hfill
-   \begin{minipage}[t]{0.0in}
-     % dummy (needed here)
-  \end{minipage}
-%  \medskip
-  % Address and contact block
-  \hfill
-  \begin{minipage}[c][0.6in]{0.6in}
-  \href{https://dla2.us/res}{\qrcode[tight,level=L,nolink,height=0.6in]{https://dla2.us/res}}
-  \end{minipage}
-  \vspace{1em}
-#+END_EXPORT
+# #+LATEX_CLASS_OPTIONS: [10pt,breaklinks]
 
+* Experience
+** Research Scientist at UIUC \hfill 2015--2017
++ Epigenetic modifications associated with PTSD, the genomic basis of
+  the development of parturition in mammals, and detecting adverse
+  pregnancy outcomes using urinary exosomes.
+** Postdoctoral Researcher at USC \hfill 2013--2015
++ Identifying genes and causal alleles associated with Systemic Lupus
+  Erythematosus using genome-wide association, next-generation
+  sequencing, computational and biochemical approaches.
+** Postdoctoral Researcher at UCR \hfill 2010--2012
++ Identifying genes which are associated with Systemic Lupus
+  Erythematosus using prior information and targeted trio-based
+  studies.
+** Debian Developer \hfill 2004--Present
++ \emph{Debian Project}, Developer; Technical Committee Member
+  (2010--2016), Technical Committee Chair (2015--2016).
 
 * Education
-** UC Riverside
-+ *PhD* in Cell, Molecular and Developmental Biology
-+ *BS* in Biology
+** Doctor of Philosophy (PhD) \hfill UC Riverside
+ + Cell, Molecular and Developmental Biology.
+** Batchelor of Science (BS) in Biology \hfill UC Riverside
+
 * Skills
 ** Genomics and Epigenomics
 + *NGS* and array-based Genomics and Epigenomics of complex human
@@ -46,21 +37,20 @@
 + Reproducible, scalable bioinformatics analysis using make,
   *nextflow*, and *cwl* based workflows on cloud- and cluster-based
   systems on terabyte-scale datasets
-+ Alignment, annotation, and variant calling using existing and
-  custom-written software, including *GATK*, *bwa*, *STAR*, and
-  *kallisto*.
++ Alignment, annotation, and variant calling using existing and custom
+  software, including *GATK*, *bwa*, *STAR*, and *kallisto*.
 + Correcting for and experimental design to overcome multiple
   testing, confounders, and batch effects using Bayesian and
   frequentist methods approaches
 # + Using evolutionary genomics to identify causal human variants
 ** Statistics
-+ Statistical modeling (regression, inference, Bayesian and
-  frequentist approaches in very large (> 1TB) datasets)
++ Statistical modeling (regression, inference, prediction, and
+  learning in very large (> 1TB) datasets)
 + Addressing confounders and batch effects
 # + Reproducible research
 ** Big Data
 + Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure)
-+ Inter-process communication: MPI, OpenMP, Hadoop
++ Inter-process communication: MPI, OpenMP
 + Filestorage: Gluster, CEFS, GPFS, Lustre
 + Linux system administration
 ** Mentoring and Leadership
@@ -69,10 +59,11 @@
 + Former chair of Debian's Technical Committee
 + Head developer behind https://bugs.debian.org
 ** Software Development
-+ Languages: perl, R, C, C++, python, groovy, assembly, sh, make
++ Languages: perl, R, C, C++, python, groovy, sh, make
 + Collaborative Development: git, travis, continuous integration,
   automated testing
-+ Databases: Postgresql (PL/SQL), SQLite, Mysql
++ Web, Mobile: Shiny, jQuery, JavaScript
++ Databases: Postgresql (PL/SQL), SQLite, Mysql, NoSQL
 + Office Software: Gnumeric, Libreoffice, \LaTeX, Word, Excel,
   Powerpoint
 ** Communication
@@ -85,36 +76,6 @@
 # + *Psychiatric Genomics Consortium*: Identification of epigenetic
 #   variants which are correlated with PTSD.
 # + *SLEGEN*: System lupus erythematosus genetics consortium.
-
-#+BEGIN_EXPORT latex
-\end{minipage}
-  \hfill
-   \begin{minipage}[t]{0.0in}
-     % dummy (needed here)
-  \end{minipage}
-  \medskip
-\hfill
-\begin{minipage}[t]{0.55\textwidth}
-
-#+END_EXPORT
-* Experience
-** Research Scientist at UIUC
-+ 2015--Present. University of Illinois at Urbana-Champaign. Epigenetic
-  modifications associated with PTSD, the genomic basis of the
-  development of parturition in mammals, and detecting adverse
-  pregnancy outcomes using urinary exosomes.
-** Postdoctoral Researcher at USC
-+ 2013--2015. Identifying genes and causal alleles associated with
-  Systemic Lupus Erythematosus using genome-wide association,
-  next-generation sequencing, computational and biochemical
-  approaches.
-** Postdoctoral Researcher at UCR
-+ 2010--2012. Identifying genes which are associated with Systemic
-  Lupus Erythematosus using prior information and targeted trio-based
-  studies.
-** Debian Developer
-+ 2004--Present. \emph{Debian Project}, Developer; Technical Committee
-  Member (2010--2016), Technical Committee Chair (2015--2016).
 * Authored Software
 + *[[http://bugs.debian.org][Debbugs]]*: Bug tracking software for the Debian GNU/Linux
    distribution. [[https://bugs.debian.org]]
@@ -124,10 +85,11 @@
 + *[[http://rzlab.ucr.edu/scripts/wheel/wheel.cgi?sequence=ABCDEFGHIJLKMNOP&submit=Submit][Helical Wheel Projections]]*: Web-based tool to draw helical wheel
    protein projections. [[http://rzlab.ucr.edu/scripts/wheel]]
 * Publications and Presentations
-+ 20 peer-reviewed refereed publications cited over 1700 times:
++ 24 peer-reviewed publications cited over 1800 times:
   https://dla2.us/pubs
-+ Publication record in GWAS, expression analysis of microarrays,
-  epigenetics, comparative evolution of mammals, and lipid membranes
++ Publication record in GWAS, expression analysis of microarrays, SLE,
+  GBM, epigenetics, comparative evolution of mammals, and lipid
+  membranes
 + H index of 11
 + Multiple presentations on EWAS of PTSD, genetics of SLE, and Open
   Source: https://dla2.us/pres
@@ -147,9 +109,5 @@
 + 2001--2003: University of California, Riverside Doctoral Fellowship
 + 1997--2001: Regents of the University of California Scholarship.
 
-#+BEGIN_EXPORT latex
-\end{minipage}
-#+END_EXPORT
-