X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=distancecommand.h;h=ddce0449d5498d48914f95d9ff64900b12837ccf;hb=f12174bc43f9e8ad536f2a37fb3a763b1ac90ba9;hp=f55f7144fa548fe30eae2b075a8abcf8fd4584f0;hpb=e0dc0bcef2a0f7e1f63abb531dbb1ad533da98ca;p=mothur.git

diff --git a/distancecommand.h b/distancecommand.h
index f55f714..ddce044 100644
--- a/distancecommand.h
+++ b/distancecommand.h
@@ -53,7 +53,7 @@ struct distanceData {
 };
 
 /**************************************************************************************************/
-#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
+#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix)
 #else
 static DWORD WINAPI MyDistThreadFunction(LPVOID lpParam){ 
 	distanceData* pDataArray;
@@ -178,7 +178,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "dist.seqs";			}
 	string getCommandCategory()		{ return "Sequence Processing";	}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "Schloss PD (2010). The effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies. PLoS Comput Biol 6: e1000844. \nhttp://www.mothur.org/wiki/Dist.seqs"; }
 	string getDescription()		{ return "calculate the pairwaise distances between aligned sequences"; }