X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=distancecommand.h;h=9dea351250b7c7550a1071ca3189051345245d01;hb=2ecee16fec29d4c525f740ec19b27962ca09c050;hp=66d8af15d1c3b2ffc67e747bb14c9ee7ca0f2480;hpb=ae57e166b2ed7b475ec3f466106bd76fabadd063;p=mothur.git

diff --git a/distancecommand.h b/distancecommand.h
index 66d8af1..9dea351 100644
--- a/distancecommand.h
+++ b/distancecommand.h
@@ -24,7 +24,7 @@
 //custom data structure for threads to use.
 // This is passed by void pointer so it can be any data type
 // that can be passed using a single void pointer (LPVOID).
-typedef struct distanceData {
+struct distanceData {
 	int startLine;
 	int endLine;
 	string dFileName;
@@ -53,7 +53,7 @@ typedef struct distanceData {
 };
 
 /**************************************************************************************************/
-#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
+#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix)
 #else
 static DWORD WINAPI MyDistThreadFunction(LPVOID lpParam){ 
 	distanceData* pDataArray;
@@ -178,6 +178,7 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "dist.seqs";			}
 	string getCommandCategory()		{ return "Sequence Processing";	}
+	string getOutputFileNameTag(string, string);
 	string getHelpString();	
 	string getCitation() { return "Schloss PD (2010). The effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies. PLoS Comput Biol 6: e1000844. \nhttp://www.mothur.org/wiki/Dist.seqs"; }
 	string getDescription()		{ return "calculate the pairwaise distances between aligned sequences"; }