X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=distancecommand.h;h=8322eeedee6721ae333fdcbd6bc0447c9d654c53;hb=e7fe6dd9db877b98c362f9524c3130bbbd037200;hp=1f43856f43a033473a62c420e5c0bfce191fb182;hpb=bffbd9ad0d837bc9523d95e7b35c34cfd2631046;p=mothur.git

diff --git a/distancecommand.h b/distancecommand.h
index 1f43856..8322eee 100644
--- a/distancecommand.h
+++ b/distancecommand.h
@@ -17,6 +17,11 @@
 #include "dist.h"
 #include "sequencedb.h"
 
+struct linePair {
+	int start;
+	int end;
+};
+
 class DistanceCommand : public Command {
 
 public:
@@ -32,11 +37,15 @@ private:
 	ofstream out, phylipOut;
 	ifstream in;
 	string outputFileName;
-	string countends;
+	string countends, phylip;
 	int processors;
 	float cutoff;
+	map<int, int> processIDS;   //end line, processid
+	map<int, int>::iterator it;
+	vector<linePair*> lines;
 	
 	void appendFiles(string, string);
+	void createProcesses(string, string);
 	int driver(Dist*, SequenceDB*, int, int, string, string, float);
 
 };