X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=distancecommand.h;h=36a1e24b0986bb24a106fb3b72f6cba17f1acfce;hb=83b5acbe3d6087a6cd73e80dde4b923387a01d01;hp=c1dac1443a4d2a213ab715d79908e6dd76027a62;hpb=aba5f8811829037b0a3004ef33f0ad4ed5e5fcf8;p=mothur.git

diff --git a/distancecommand.h b/distancecommand.h
index c1dac14..36a1e24 100644
--- a/distancecommand.h
+++ b/distancecommand.h
@@ -34,8 +34,8 @@ private:
 	Dist* distCalculator;
 	SequenceDB alignDB;
 
-	string countends, output, fastafile, calc, outputDir;
-	int processors;
+	string countends, output, fastafile, calc, outputDir, oldfastafile, column;
+	int processors, numNewFasta;
 	float cutoff;
 	map<int, int> processIDS;   //end line, processid
 	vector<linePair*> lines;
@@ -49,9 +49,11 @@ private:
 	
 	#ifdef USE_MPI 
 	int driverMPI(int, int, MPI_File&, float);
+	int driverMPI(int, int, string, long&);
 	#endif
 	
 	int convertMatrix(string);
+	bool sanityCheck();
 	int convertToLowerTriangle(string);
 
 };