X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=deuniqueseqscommand.h;h=042ff498fce19a60cd51d7b1393ec2cd4074123c;hb=0c5f99d1282405e20458e2822aa1a54774d2fa83;hp=5310b83b3002c8b3d52b32bdb56bf8cc772eddd2;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96;p=mothur.git

diff --git a/deuniqueseqscommand.h b/deuniqueseqscommand.h
index 5310b83..042ff49 100644
--- a/deuniqueseqscommand.h
+++ b/deuniqueseqscommand.h
@@ -23,8 +23,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "deunique.seqs";		}
 	string getCommandCategory()		{ return "Sequence Processing";		}
-	string getOutputFileNameTag(string, string);
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Deunique.seqs"; }
 	string getDescription()		{ return "reverse of the unique.seqs command, and creates a fasta file from a fasta and name file"; }
 
@@ -35,13 +36,10 @@ public:
 	
 private:
 
-	string fastaFile, nameFile, outputDir;
+	string fastaFile, nameFile, outputDir, countfile;
 	vector<string> outputNames;
 	bool abort;
-	
-	map<string, string> nameMap;
-	
-	int readNamesFile();
+
 	
 };