X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=deuniqueseqscommand.cpp;fp=deuniqueseqscommand.cpp;h=1d87204abd165396a20f99cbef0e3440eadbcd95;hb=348de0f8b17d84ede77081dcf67bd6ef43496677;hp=214359e3353f5521aa337085ce46136187d326c0;hpb=5e031adc86a1fc125c4abb3d4048f209d52f9b6d;p=mothur.git

diff --git a/deuniqueseqscommand.cpp b/deuniqueseqscommand.cpp
index 214359e..1d87204 100644
--- a/deuniqueseqscommand.cpp
+++ b/deuniqueseqscommand.cpp
@@ -215,6 +215,13 @@ int DeUniqueSeqsCommand::execute() {
 		outputNames.push_back(outFastaFile);  outputTypes["fasta"].push_back(outFastaFile);  
 		m->mothurOutEndLine();
 		
+		//set fasta file as new current fastafile
+		string current = "";
+		itTypes = outputTypes.find("fasta");
+		if (itTypes != outputTypes.end()) {
+			if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setFastaFile(current); }
+		}
+		
 		return 0;
 	}
 	catch(exception& e) {