X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=degapseqscommand.h;h=3b03c9b0ca1d8a61704dd3c13885d12d8204100a;hb=372fb21ea66ced432b109225851a1b80ef0491a3;hp=0bf0a5759ec163cc1b0f87fd693913cd02a8a127;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git diff --git a/degapseqscommand.h b/degapseqscommand.h index 0bf0a57..3b03c9b 100644 --- a/degapseqscommand.h +++ b/degapseqscommand.h @@ -22,9 +22,12 @@ public: vector setParameters(); string getCommandName() { return "degap.seqs"; } string getCommandCategory() { return "Sequence Processing"; } + string getHelpString(); + string getOutputPattern(string); string getCitation() { return "http://www.mothur.org/wiki/Degap.seqs"; } - + string getDescription() { return "removes gap characters from sequences"; } + int execute(); void help() { m->mothurOut(getHelpString()); }