X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=degapseqscommand.h;fp=degapseqscommand.h;h=192d6eb7397e143e5ff91389ca37a5be98857a6e;hb=4ee9d3c973fb056f3105c26306da3b5d7dfb8108;hp=0000000000000000000000000000000000000000;hpb=2bb20fb79f19b8bda48492d89f8e8b7389431413;p=mothur.git

diff --git a/degapseqscommand.h b/degapseqscommand.h
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--- /dev/null
+++ b/degapseqscommand.h
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+#ifndef DEGAPSEQSCOMMAND_H
+#define DEGAPSEQSCOMMAND_H
+
+/*
+ *  degapseqscommand.h
+ *  Mothur
+ *
+ *  Created by westcott on 6/21/10.
+ *  Copyright 2010 Schloss Lab. All rights reserved.
+ *
+ */
+
+
+#include "command.hpp"
+
+class DegapSeqsCommand : public Command {
+public:
+	DegapSeqsCommand(string);
+	~DegapSeqsCommand();
+	int execute();
+	void help();
+	
+private:
+
+	bool abort;
+	string fastafile, outputDir;
+	vector<string> outputNames;
+	vector<string> fastaFileNames;
+	
+};
+
+#endif
+