X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=deconvolutecommand.h;h=673ffc9e4d2e689cd32c6b16867089fe43f216d1;hb=90708fe9701e3827e477c82fb3652539c3bf2a0d;hp=7d4cb50023eb6312b652a8368d2d862882b3ffd4;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96;p=mothur.git

diff --git a/deconvolutecommand.h b/deconvolutecommand.h
index 7d4cb50..673ffc9 100644
--- a/deconvolutecommand.h
+++ b/deconvolutecommand.h
@@ -11,6 +11,7 @@
 
 #include "command.hpp"
 #include "fastamap.h"
+#include "counttable.h"
 
 /* The unique.seqs command reads a fasta file, finds the duplicate sequences and outputs a names file
 	containing 2 columns.  The first being the groupname and the second the list of identical sequence names. */ 
@@ -37,7 +38,7 @@ public:
 	
 	
 private:
-	string inFastaName, oldNameMapFName, outputDir;
+	string inFastaName, oldNameMapFName, outputDir, countfile;
 	vector<string> outputNames;
 
 	bool abort;