X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=deconvolutecommand.cpp;h=dd05afdd0243132497fdab828c384b287ff0b61c;hb=15cde0905641f8adddc1cc704f8c064f760e7461;hp=3129ea0ad368cb8c08a5ca2e9f036c38e4b1a441;hpb=8bc3e5b38c2317a1715f53be22fa96455868c281;p=mothur.git

diff --git a/deconvolutecommand.cpp b/deconvolutecommand.cpp
index 3129ea0..dd05afd 100644
--- a/deconvolutecommand.cpp
+++ b/deconvolutecommand.cpp
@@ -24,6 +24,7 @@ vector<string> DeconvoluteCommand::getValidParameters(){
 //**********************************************************************************************************************
 DeconvoluteCommand::DeconvoluteCommand(){	
 	try {
+		abort = true;
 		//initialize outputTypes
 		vector<string> tempOutNames;
 		outputTypes["fasta"] = tempOutNames;