X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=deconvolutecommand.cpp;h=98109ef33c488a071b04ad5ada84ffcab9d2e1f8;hb=250e3b11b1c9c1e1ad458ab6c7e71ac2e67e11d9;hp=8b73425fc5c2aefb2d7e3b4a87caf4fa8be44c40;hpb=af0a94ea8f02421b2b73e77e68753a2b4c37768e;p=mothur.git

diff --git a/deconvolutecommand.cpp b/deconvolutecommand.cpp
index 8b73425..98109ef 100644
--- a/deconvolutecommand.cpp
+++ b/deconvolutecommand.cpp
@@ -209,7 +209,7 @@ int DeconvoluteCommand::execute() {
         }
         CountTable ct;
         if (countfile != "")  {  
-            ct.readTable(countfile, false);
+            ct.readTable(countfile, true, false);
             if (countfile == outCountFile){
                 //prepare filenames and open files
                 map<string, string> mvariables;