X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=deconvolutecommand.cpp;h=3d0c0d51acaac8844b71a3efa40c7925674ad4c5;hb=8a0b2fd6644dee848b262fcdea73b912a6054fed;hp=3541e00d064233c4da10619789291222290b33f1;hpb=16abd6271c455bd01b34ff89a2e3641bef0fa128;p=mothur.git

diff --git a/deconvolutecommand.cpp b/deconvolutecommand.cpp
index 3541e00..3d0c0d5 100644
--- a/deconvolutecommand.cpp
+++ b/deconvolutecommand.cpp
@@ -154,7 +154,10 @@ int DeconvoluteCommand::execute() {
 		
 		map<string, string> nameMap;
 		map<string, string>::iterator itNames;
-		if (oldNameMapFName != "")  {  m->readNames(oldNameMapFName, nameMap); }
+		if (oldNameMapFName != "")  {  
+            m->readNames(oldNameMapFName, nameMap); 
+            if (oldNameMapFName == outNameFile){ outNameFile = outputDir + m->getRootName(m->getSimpleName(inFastaName)) + "unique.names";   }
+        }
 		
 		if (m->control_pressed) { return 0; }