X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=database.hpp;h=f974ae966ed5f85c1136ed59a0c82b79f2f847d2;hb=1cf188b912d6da8f2cd03dd71cecef664a699c1a;hp=f9c0c4878c31a67e2df415387f5ee5cf3bbda939;hpb=1b49ed179327150ebf24d77b33d9b3e6872cc8c0;p=mothur.git diff --git a/database.hpp b/database.hpp index f9c0c48..f974ae9 100644 --- a/database.hpp +++ b/database.hpp @@ -50,7 +50,7 @@ public: virtual void addSequence(Sequence) = 0; //add sequence to search engine virtual string getName(int) { return ""; } virtual vector findClosestSequences(Sequence*, int) = 0; // returns indexes of n closest sequences to query - virtual vector findClosestMegaBlast(Sequence*, int){return results;} + virtual vector findClosestMegaBlast(Sequence*, int, int){return results;} virtual float getSearchScore(); virtual vector getSearchScores() { return Scores; } //assumes you already called findClosestMegaBlast virtual int getLongestBase();