X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=database.hpp;h=bbe01c456acbb9e66c56127d9bc23371e09b5ddf;hb=d04f948b1a2a1a2984fc4a45d04403b8c121c5bc;hp=efc7ba7f111d956c31d20626d825c079cf7963c8;hpb=fdc1f6eaf544f695fc1511f24bddd7e6069c33ba;p=mothur.git

diff --git a/database.hpp b/database.hpp
index efc7ba7..bbe01c4 100644
--- a/database.hpp
+++ b/database.hpp
@@ -20,6 +20,7 @@
 struct seqMatch {  //used to select top n matches
 		int seq;
 		int match;
+		seqMatch() {}
 		seqMatch(int s, int m) : seq(s), match(m) {}
 };
 /**************************************************************************************************/
@@ -47,6 +48,7 @@ public:
 	virtual ~Database();
 	virtual void generateDB() = 0; 
 	virtual void addSequence(Sequence) = 0;  //add sequence to search engine
+	virtual string getName(int) { return ""; }  
 	virtual vector<int> findClosestSequences(Sequence*, int) = 0;  // returns indexes of n closest sequences to query
 	virtual vector<int> findClosestMegaBlast(Sequence*, int){return results;}
 	virtual float getSearchScore();
@@ -56,11 +58,6 @@ public:
 	virtual vector<int> getSequencesWithKmer(int){ vector<int> filler; return filler; };  
 	virtual int getMaxKmer(){	return 1;	};
 	
-	#ifdef USE_MPI	
-	virtual int MPISend(int) = 0;
-	virtual int MPIRecv(int) = 0;
-	#endif
-	
 protected:
 	MothurOut* m;
 	int numSeqs, longest;