X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=database.hpp;h=b2817a779dc1b95070ef77fbe6e8bf5b11159a3c;hb=731d19a6eaf81768ed35e4be25fbac5686a2a7a0;hp=f974ae966ed5f85c1136ed59a0c82b79f2f847d2;hpb=1cf188b912d6da8f2cd03dd71cecef664a699c1a;p=mothur.git

diff --git a/database.hpp b/database.hpp
index f974ae9..b2817a7 100644
--- a/database.hpp
+++ b/database.hpp
@@ -45,6 +45,7 @@ class Database {
 
 public:
 	Database();
+	Database(const Database& db) : numSeqs(db.numSeqs), longest(db.longest), searchScore(db.searchScore), results(db.results), Scores(db.Scores) { m = MothurOut::getInstance(); }
 	virtual ~Database();
 	virtual void generateDB() = 0; 
 	virtual void addSequence(Sequence) = 0;  //add sequence to search engine
@@ -57,7 +58,8 @@ public:
 	virtual void readKmerDB(ifstream&){};
 	virtual void setNumSeqs(int i) {	numSeqs = i; 	}
 	virtual vector<int> getSequencesWithKmer(int){ vector<int> filler; return filler; };  
-	virtual int getMaxKmer(){	return 1;	};
+	virtual int getReversed(int) { return 0; } 
+	virtual int getMaxKmer(){	return 1;	}
 	
 protected:
 	MothurOut* m;