X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=database.hpp;h=9293f13d5f091251d77115d2f3dc5344868d2c5c;hb=050220fe7822cc660615972a0054cf4a83eefbe4;hp=efc7ba7f111d956c31d20626d825c079cf7963c8;hpb=fdc1f6eaf544f695fc1511f24bddd7e6069c33ba;p=mothur.git diff --git a/database.hpp b/database.hpp index efc7ba7..9293f13 100644 --- a/database.hpp +++ b/database.hpp @@ -47,6 +47,7 @@ public: virtual ~Database(); virtual void generateDB() = 0; virtual void addSequence(Sequence) = 0; //add sequence to search engine + virtual string getName(int) { return ""; } virtual vector findClosestSequences(Sequence*, int) = 0; // returns indexes of n closest sequences to query virtual vector findClosestMegaBlast(Sequence*, int){return results;} virtual float getSearchScore(); @@ -56,11 +57,6 @@ public: virtual vector getSequencesWithKmer(int){ vector filler; return filler; }; virtual int getMaxKmer(){ return 1; }; - #ifdef USE_MPI - virtual int MPISend(int) = 0; - virtual int MPIRecv(int) = 0; - #endif - protected: MothurOut* m; int numSeqs, longest;