X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=database.hpp;h=7fd29b3ae4d09ede0d5227f639e1ea6308f778a0;hb=9ada98592a54c82d08f3d46c9b1d8c3e472a922d;hp=79050777acd7d695754d7a382741538d35409b94;hpb=5a1e62397b91f57d0d3aff635891df04b8999a88;p=mothur.git

diff --git a/database.hpp b/database.hpp
index 7905077..7fd29b3 100644
--- a/database.hpp
+++ b/database.hpp
@@ -48,7 +48,7 @@ public:
 	virtual void generateDB() = 0; 
 	virtual void addSequence(Sequence) = 0;  //add sequence to search engine
 	virtual vector<int> findClosestSequences(Sequence*, int) = 0;  // returns indexes of n closest sequences to query
-	virtual map<int, float> findClosest(Sequence*, int){ return results; }  // returns of n closest sequences to query and their search scores
+	virtual vector<int> findClosestMegaBlast(Sequence*, int){return results;}
 	virtual float getSearchScore();
 	virtual int getLongestBase(); 
 	virtual void readKmerDB(ifstream&){};
@@ -60,7 +60,7 @@ public:
 protected:
 	int numSeqs, longest;
 	float searchScore;
-	map<int, float> results;
+	vector<int> results;
 };
 /**************************************************************************************************/
 #endif