X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=database.hpp;fp=database.hpp;h=79050777acd7d695754d7a382741538d35409b94;hb=5a1e62397b91f57d0d3aff635891df04b8999a88;hp=f52cdd58be86d31be87951df68d13983dc9bc921;hpb=df92022fc75c08b91cefa2c6ca4fd7b23eb480b0;p=mothur.git

diff --git a/database.hpp b/database.hpp
index f52cdd5..7905077 100644
--- a/database.hpp
+++ b/database.hpp
@@ -48,6 +48,7 @@ public:
 	virtual void generateDB() = 0; 
 	virtual void addSequence(Sequence) = 0;  //add sequence to search engine
 	virtual vector<int> findClosestSequences(Sequence*, int) = 0;  // returns indexes of n closest sequences to query
+	virtual map<int, float> findClosest(Sequence*, int){ return results; }  // returns of n closest sequences to query and their search scores
 	virtual float getSearchScore();
 	virtual int getLongestBase(); 
 	virtual void readKmerDB(ifstream&){};
@@ -59,6 +60,7 @@ public:
 protected:
 	int numSeqs, longest;
 	float searchScore;
+	map<int, float> results;
 };
 /**************************************************************************************************/
 #endif