X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=createdatabasecommand.h;fp=createdatabasecommand.h;h=741feba082958ae8e4f2ec73f7a188255208b069;hb=957d67f7d8bbadfd2930de061e89fd9b149270fd;hp=85e23675b2b770d476dfff45b901da03f6581546;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96;p=mothur.git

diff --git a/createdatabasecommand.h b/createdatabasecommand.h
index 85e2367..741feba 100644
--- a/createdatabasecommand.h
+++ b/createdatabasecommand.h
@@ -34,13 +34,15 @@ public:
 private:
 	
 	bool abort;
-	string listfile, groupfile, repfastafile, repnamesfile, contaxonomyfile, label, outputDir;
+	string sharedfile, listfile, groupfile, repfastafile, repnamesfile, contaxonomyfile, label, outputDir;
 	
 	vector<string> outputNames;
 		
 	vector<int> readFasta(vector<Sequence>&);
-    vector<int> readTax(vector<string>&);
+    vector<int> readTax(vector<string>&, vector<string>&);
 	ListVector* getList();
+    vector<SharedRAbundVector*> getShared();
+    int findIndex(vector<string>&, string);
 	
 };