X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=createdatabasecommand.h;fp=createdatabasecommand.h;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=643ff6ec9fc3691c4a9de5f146cbfb1fdcaff354;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/createdatabasecommand.h b/createdatabasecommand.h
deleted file mode 100644
index 643ff6e..0000000
--- a/createdatabasecommand.h
+++ /dev/null
@@ -1,50 +0,0 @@
-#ifndef Mothur_createdatabasecommand_h
-#define Mothur_createdatabasecommand_h
-
-//
-//  createdatabasecommand.h
-//  Mothur
-//
-//  Created by Sarah Westcott on 3/28/12.
-//  Copyright (c) 2012 Schloss Lab. All rights reserved.
-//
-
-#include "command.hpp"
-#include "listvector.hpp"
-#include "sequence.hpp"
-
-class CreateDatabaseCommand : public Command {
-public:
-	CreateDatabaseCommand(string);
-	CreateDatabaseCommand();
-	~CreateDatabaseCommand(){}
-	
-	vector<string> setParameters();
-	string getCommandName()			{ return "create.database";		}
-	string getCommandCategory()		{ return "OTU-Based Approaches"; }
-	string getHelpString();	
-	string getCitation() { return "http://www.mothur.org/wiki/Create.database"; }
-	string getDescription()		{ return "creates database file that includes, abundances across groups, representative sequences, and taxonomy for each OTU"; }
-    
-	
-	int execute(); 
-	void help() { m->mothurOut(getHelpString()); }	
-	
-private:
-	
-	bool abort;
-	string listfile, groupfile, repfastafile, repnamesfile, contaxonomyfile, label, outputDir;
-	
-	vector<string> outputNames;
-		
-	vector<int> readFasta(vector<Sequence>&);
-    vector<int> readTax(vector<string>&);
-    int readNames(map<string, string>&); 
-	ListVector* getList();
-	
-};
-
-
-
-
-#endif