X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=createdatabasecommand.cpp;h=febd762592acdca2df39b7d8d076f0020dfa444d;hb=49d2b7459c5027557564b21e9487dadafbbbdc96;hp=57d5264b8b151d4175b6754ab2ee75732e1e597e;hpb=ee8403d4eb5760187d62b42a9cf4272de8fc0ec4;p=mothur.git diff --git a/createdatabasecommand.cpp b/createdatabasecommand.cpp index 57d5264..febd762 100644 --- a/createdatabasecommand.cpp +++ b/createdatabasecommand.cpp @@ -53,6 +53,27 @@ string CreateDatabaseCommand::getHelpString(){ exit(1); } } +//********************************************************************************************************************** +string CreateDatabaseCommand::getOutputFileNameTag(string type, string inputName=""){ + try { + string outputFileName = ""; + map >::iterator it; + + //is this a type this command creates + it = outputTypes.find(type); + if (it == outputTypes.end()) { m->mothurOut("[ERROR]: this command doesn't create a " + type + " output file.\n"); } + else { + if (type == "database") { outputFileName = "database"; } + else { m->mothurOut("[ERROR]: No definition for type " + type + " output file tag.\n"); m->control_pressed = true; } + } + return outputFileName; + } + catch(exception& e) { + m->errorOut(e, "CreateDatabaseCommand", "getOutputFileNameTag"); + exit(1); + } +} + //********************************************************************************************************************** CreateDatabaseCommand::CreateDatabaseCommand(){ try { @@ -244,7 +265,7 @@ int CreateDatabaseCommand::execute(){ if (m->control_pressed) { delete list; if (groupfile != "") { delete groupmap; } return 0; } if (outputDir == "") { outputDir += m->hasPath(listfile); } - string outputFileName = outputDir + m->getRootName(m->getSimpleName(listfile)) + "database"; + string outputFileName = outputDir + m->getRootName(m->getSimpleName(listfile)) + getOutputFileNameTag("database"); outputNames.push_back(outputFileName); outputTypes["database"].push_back(outputFileName); ofstream out;