X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=createdatabasecommand.cpp;fp=createdatabasecommand.cpp;h=235682bfec8fdfc36c43ed25fb78ffd06eef1b4f;hb=a935b75dd890da5ae7f09e5e6179f90ab2955348;hp=eab7c8261a55e45abe3f762f86cc46e59c9822a6;hpb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;p=mothur.git

diff --git a/createdatabasecommand.cpp b/createdatabasecommand.cpp
index eab7c82..235682b 100644
--- a/createdatabasecommand.cpp
+++ b/createdatabasecommand.cpp
@@ -298,7 +298,7 @@ int CreateDatabaseCommand::execute(){
             }
             repNames = tempRepNames;
         }else {
-            ct.readTable(countfile, true);
+            ct.readTable(countfile, true, false);
             numUniqueNamesFile = ct.getNumUniqueSeqs();
             nameMap = ct.getNameMap();
         }
@@ -506,7 +506,7 @@ int CreateDatabaseCommand::findIndex(vector<string>& otuLabels, string label){
 	try {
         int index = -1;
         for (int i = 0; i < otuLabels.size(); i++) {
-            if (otuLabels[i] == label) { index = i; break; }
+            if (m->isLabelEquivalent(otuLabels[i],label)) { index = i; break; }
         }
 		return index;
     }